1wit_ref2 - reference 2

Name                 twitchin		

Number of sequences              22
Alignment Length                 121
Longest Sequence                 106
Shortest Sequence                85
Average Percent Identity         23
Maximum Percent Identity         55
Minimum Percent Identity         10

Sequence Name    SWISSPROT Accession
1wit                 Q23550         
cpsf_chick           P16419         
cpss_human           Q00872         
myms_human           P52179         
vca1_mouse           P29533         
1tlk                 P56276         
cavt_brala           P05548         
dcc_human            P43146         
ptpf_human           P10586         
mpsf_human           P54296         
pgbm_mouse           Q05793         
iml2_drome           Q09024         
vgr2_mouse           P35918         
nca2_xenla           P36335         
axo1_chick           P28685         
nrg_drome            P20241         
caml_rat             Q05695         
cont_mouse           P12960         
lar_drome            P16621         
2ncm                 P13596         
1hnf                 P06729         
1vcaA                P19320         

Family   1wit cpsf_chick cpss_human myms_human vca1_mouse 1tlk cavt_brala dcc_human ptpf_human mpsf_human pgbm_mouse iml2_drome vgr2_mouse nca2_xenla axo1_chick nrg_drome caml_rat cont_mouse lar_drome
Family   2ncm
Family   1hnf
Family   1vcaA


1wit         1  .......lkpkiltas.rkikikaGFTHNLEVDFIGa..pdPTATWtvg.
cpsf_chick   1  .......ldcsgkaae.ntivvvaGNKVRLDVPISGe..paPTVTWkrg.
cpss_human   1  ......kiilgdldad.ntvtviaGNKLRLEIPISGe..ppPKAMWsrg.
myms_human   1  ....knrarvlgglpd..vvtiqeGKALNLTCNVWGd..ppPEVSWlkn.
vca1_mouse   1  ......kettiwvsp...spileeGSPVNLTCSSDGi..paPKILWsrql
1tlk         1  ......hvkpyftkti.ldmdvveGSAARFDCKVEGy..pdPEVMWfkd.
cavt_brala   1  ...keksipkfsqvl..kdmfvmeGSAVTFFARVWGi..pdPVIKWfkd.
dcc_human    1  aeltvlvppwflnhp..snlyayeSMDIEFECTVSGk..pvPTVNWmkn.
ptpf_human   1  agahgdskpvfikvp..edqtglsGGVASFVCQATGe..pkPRITWmkk.
mpsf_human   1  ....knrgrligglp..dvvtimeGKTLNLTCTVFGn..pdPEVIWfkn.
pgbm_mouse   1  .....qalpqistpp...eirvpaGSAAVFPCMASGy..ptPAITWskv.
iml2_drome   1  .......kprivyte..kthldlmGSNIQLPCRVHAr..prAEITWlnn.
vgr2_mouse   1  ....ermapmitgnl..enqtttiGETIEVTCPASGn..ptPHITWfkd.
nca2_xenla   1  .....ppliqarqir..vnatanmDESVVLSCDADGf..pdPEISWlkk.
axo1_chick   1  .....haqpdwldvi..tdteadiGSDLRWSCVASGk..prPAVRWlrd.
nrg_drome    1  ylnvqaepptiseap..aavstvdGRNVTIKCRVNGs..pkPLVKWlra.
caml_rat     1  .......fptnsss....hlvalqGQSLILECIAEGf..ptPTIKWlhp.
cont_mouse   1  ......laptfemnpmkkkilaakGGRVIIECKPKAa..pkPKFSWskg.
lar_drome    1  ........peiirkp..qnqgvrvGGVASFYCAARGd..ppPSIVWrkn.
2ncm         1  ......rvlqvdivp..sqgeisvGESKFFLCQVAGda.kdKDISWfsp.
1hnf         1  .......avskeitna.letwgalGQDINLDIPSFQmsddiDDIKWekts
1vcaA        1  ........fkiettpe.srylaqiGDSVSLTCSTTGc..esPFFSWrtq.

1wit        40  .dsgaala..........pellvdaks.sTTSIFFPSAK.RADSGNYKLK
cpsf_chick  40  .dqlftat.........egrvhidsqa.dLSSFVIESAE.RSDEGRYCIT
cpss_human  41  .dkaimeg.........sgrirtesyp.dSSTLVIDIAE.RDDSGVYHIN
myms_human  42  .ekalaqt........dhcnlkfeag..rTAYFTINGVS.TADSGKYGLV
vca1_mouse  40  nngelqp..............lse.....NTTLTFMSTK.RDDSGIYVCE
1tlk        41  .dnpvkes..........rhfqidydeegNCSLTISEVC.GDDDAKYTCK
cavt_brala  43  .gqevkqg..........pkheikfddkdGTFLIIRNAD.GDDVGTYTCQ
dcc_human   46  .gdvvips..........dyfqivg....GSNLRILGVV.KSDEGFYQCV
ptpf_human  46  .gkkvssq..........rfeviefddgaGSVLRIQPLRVQRDEAIYECT
mpsf_human  42  .dqdiqls........ehfsvkveqa..kYVSMTIKGVT.SEDSGKYSIN
pgbm_mouse  40  .dgdlpp............dsrle.....NNMLMLPSVR.PEDAGTYVCT
iml2_drome  39  enkeivqg.........hrhrvla.....NGDLLISEIK.WEDMGNYKCI
vgr2_mouse  42  .netlved..........sgivlrd...gNRNLTIRRVR.KEDGGLYTCQ
nca2_xenla  41  .gepiedg..........eekisfne..dKSEMTIYRVE.KEDEAEYSCI
axo1_chick  41  .gqplas............qnrievs...GGELRFSKLV.LEDSGMYQCV
nrg_drome   46  .snwltgg...........rynvqa....NGDLEIQDVT.FSDAGKYTCY
caml_rat    37  .sdpmpt...........drviyqnh...NKTLQLLNVG.EEDDGEYTCL
cont_mouse  42  .tewlvns..........sriliwe....DGSLEINNIT.RNDGGIYTCF
lar_drome   38  .gkkvsgt........qsrytvleqp.ggISILRIEPVRAGRDDAPYECV
2ncm        41  ngeklspn........qqrisvvwnd.ddSSTLTIYNAN.IDDAGIYKCV
1hnf        43  dkkkiaqfrkeketfkekdtyklfk....NGTLKIKHLK.TDDQDIYKVS
1vcaA       39  idspln..............gkvtne.gtTSTLTMNPVSFGNE.HSYLCT

1wit        77  VKNELGE..DEAIFEVIVq..
cpsf_chick  78  VTNPVGE..DSATLHVRV...
cpss_human  79  LKNEAGE..AHASIKVKV...
myms_human  80  VKNKYGS..ETSDFTVSV...
vca1_mouse  70  GINEAGI..SRKSVELII...
1tlk        79  AVNSLGE..ATCTAELLVetm
cavt_brala  81  ATNSFGE..AFDSARLALe..
dcc_human   80  AENEAGN..AQTSAQLIVp..
ptpf_human  85  ATNSLGE..INTSAKLSV...
mpsf_human  80  IKNKYGG..EKIDVTVSV...
pgbm_mouse  71  ATNRQGK..VKAFAYLQVpe.
iml2_drome  74  ARNVVG...KDTADTFVYp..
vgr2_mouse  77  ACNVLGC..ARAETLFIIe..
nca2_xenla  77  ANNQAGE..AEAIVLLKV...
axo1_chick  74  AENKHGT..VYASAELTVqa.
nrg_drome   79  AQNKFGE..IQADGSLVVke.
caml_rat    71  AENSLGS..ARHAYYVTVe..
cont_mouse  76  AENNRGK..ANSTGTLVIt..
lar_drome   78  AENGVGDA.VSADATLTIy..
2ncm        81  VTAEDGTQ.SEATVNVKIfq.
1hnf        88  IYDTKGKNVLEKIFDLKIq..
1vcaA       73  ATCESRK..LEKGIQVEIy..

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE