1havA_ref2 - reference 2

Name                 proteinase HAV										

Number of sequences              18
Alignment Length                 276
Longest Sequence                 242
Shortest Sequence                180
Average Percent Identity         31
Maximum Percent Identity         79
Minimum Percent Identity         11

Sequence Name    SWISSPROT Accession
5ptp                 P00760         
1dpo                 P00763         
1trnB                P07477         
1bit                 P35031         
1fxyA                P07477         
1ao5A                P36368         
1fleE                P19957         
1dsuB                P00746         
1faxA                P00742         
1autC                P04070         
1azzB                P00771         
1bthH                P00734         
1danH                P13726         
6chaB                P00766         
1try                 P35049         
1havA                P06441         
1agjA                P09331         
2sga                 P00776         

Family   5ptp 1dpo 1trnB 1bit 1fxyA 1ao5A 1fleE 1dsuB 1faxA 1autC 1azzB 1bthH 1danH 6chaB 1try
Family   1havA
Family   1agjA
Family   2sga


5ptp         1  ..pyqvslns.....GYHFCGGSLIn...sqwVVSAAHcy..........
1dpo         1  ..pyqvslns.....GYHFCGGSLIn...dqwVVSAAHcy..........
1trnB        1  ..pyqvslns.....GYHFCGGSLIn...eqwVVSAGHcy..........
1bit         1  ..ahqvslns.....GYHFCGGSLVn...enwVVSAAHcy..........
1fxyA        1  ..pwqallinee...NEGFCGGTILs...efyILTAAHcl........yq
1ao5A        1  ..pwqvavyyq....KEHICGGVLLd...rnwVLTAAHcy..........
1fleE        1  ..psqislqyrsgssWAHTCGGTLIr...qnwVMTAAHcv........dr
1dsuB        1  ..pymasvqln....GAHLCGGVLVa...eqwVLSAAHcl......edaa
1faxA        1  ..pwqallinee...NEGFCGGTILs...efyILTAAHcl........yq
1autC        1  ..pwqvvlldsk...KKLACGAVLIh...pswVLTAAHcm........de
1azzB        1  ..phqaalfid....DMYFCGGSLIs...pewILTAAHcm........dg
1bthH        1  ..pwqvmlfrksp..QELLCGASLIs...drwVLTAAHcllyppwdknft
1danH        1  ..pwqvlllvn....GAQLCGGTLIn...tiwVVSAAHcf.....dkikn
6chaB        1  ..pwqvslqdkt...GFHFCGGSLIn...enwVVTAAHcg.........v
1try         1  ..pfivsisrn....GGPWCGGSLLn...antVLTAAHcv......sgya
1havA        1  knlvqfgvgekn...GSVRWVMNALgvk.ddwLLVPSHaykfe...kdye
1agjA        1  ntignvfvk......GQTSATGVLIg...kntVLTNRHiakfa.....ng
2sga         1  iaggeaittg.....GSRCSLGFNVsvngvahALTAGHct..........

5ptp        31  ksGIQVRLGedninvveg..neqfisasKSIVHPSYnsn...........
1dpo        31  ksRIQVRLGehninvleg..neqfvnaaKIIKHPNFdrk...........
1trnB       31  ksRIQVRLGehnievleg..neqfinaaKIIRHPQYdrk...........
1bit        31  ksRVEVRLGehnikvteg..seqfisssRVIRHPNYssy...........
1fxyA       35  akRFKVRVGdrnteqeeg..geavheveVVIKHNRFtke...........
1ao5A       32  vdQYEVWLGknklfqeep..saqhrlvsKSFPHPGFnmsllmlqtippga
1fleE       38  elTFRVVVGehnlnqnng..teqyvgvqKIVVHPYWntddv.........
1dsuB       36  dgKVQVLLGahslsqpep..skrlydvlRAVPHPDSqpd...........
1faxA       35  akRFKVRVGdrntaaeeg..geavheveVVIKHNRFtke...........
1autC       35  skKLLVRLGeydlrrwek..weldldikEVFVHPNYsks...........
1azzB       34  agFVDVVLGahniredea..tqvtiqstDFTVHENYnsf...........
1bthH       44  enDLLVRIGkhsrtryer.niekismleKIYIHPRYnwre..........
1danH       37  wrNLIAVLGehdlsehdg..deqsrrvaQVIIPSTYvpg...........
6chaB       34  ttSDVVVAGefdqgssse..kiqklkiaKVFKNSKYnsl...........
1try        36  qsGFQIRAGslsrtsg.....gitsslsSVRVHPSYsgn...........
1havA       44  mmEFYFNRGg..........tyysisagNVVIQSLDvgf...........
1agjA       37  dpSKVSFRPsintddngntetpygeyevKEILQEPFgag...........
2sga        36  niSASWSIG..................trtgtsfp...............

5ptp        68  tlnnDIMLIKLksaaslns.....rVASISLPtsc......asaGTQCLI
1dpo        68  tlnnDIMLIKLsspvklna.....rVATVALPssc......apaGTQCLI
1trnB       68  tlnnDIMLIKLssravina.....rVSTISLPtap......patGTKCLI
1bit        68  nidnDIMLIKLskpatlnt.....yVQPVALPtsc......apaGTMCTV
1fxyA       72  tydfDIAVLRLktpitfrm.....nVAPASLPtap......patGTKCLI
1ao5A       80  dfsdDLMLLRLskpaditd.....vVKPIALPtke......pkpGSKCLA
1fleE       77  aagyDIALLRLaqsvtlns.....yVQLGVLPragt....ilanNSPCYI
1dsuB       73  tidhDLLLLQLsekatlgp.....aVRPLPWQrvdd.....vapGTLCDV
1faxA       72  tydfDIAVLRLktpitfrm.....nVAPACLPerdwaes.tlmtQKTGIV
1autC       72  ttdnDIALLHLaqpatlsq.....tIVPICLPdsglaerelnqaGQETLV
1azzB       71  visnDIAVIRLpvpvtlta.....aIATVGLPstd......vgvGTVVTP
1bthH       83  nldrDIALMKLkkpvafsd.....yIHPVCLPdretaas.llqaGYKGRV
1danH       74  ttnhDIALLRLhqpvvltd.....hVVPLCLPertfser.tlafVRFSLV
6chaB       71  tinnDITLLKLstaasfsq.....tVSAVCLPsasdd....faaGTTCVT
1try        70  ..nnDLAILKLstsipsgg.....nIGYARLAasgsd....pvaGSSATV
1havA       73  ...qDVVLMKVptipkfrdi....tQHFIKKGdvpr.....alnRLATLV
1agjA       76  ...vDLALIRLkpdqngvsl..gdkISPAKIGtsnd.....lkdGDKLEL
2sga        53  ..nnDYGIIRHsnpaaadgrvylyngsyqdittag.....nafvgqavqr

5ptp       107  SGWGntkss.....gtsypdvlkclkapilsdsscksayp.....gqits
1dpo       107  SGWGntlss.....gvnepdllqcldapllpqadceasyp.....gkitd
1trnB      107  SGWGntass.....gadypdelqcldapvlsqakceasyp.....gkits
1bit       107  SGWGntmss......tadsnklqclnipilsysdcnnsyp.....gmitn
1fxyA      111  SGWGntass.....gadypdelqcldapvlsqakceasyp.....gkits
1ao5A      119  SGWGsitpt......wqkpddlqcvfitllpnencakvyl.....qkvtd
1fleE      118  TGWGltrtn......gqlaqtlqqaylptvdyaicssssywg...stvkn
1dsuB      113  AGWGivnha......grrpdslqhvllpvldratcnrrthhd...gaite
1faxA      116  SGFGrthek......grqstrlkmlevpyvdrnscklsss.....fiitq
1autC      117  TGWGyhssre.keakrnrtfvlnfikipvvphnecsevms.....nmvse
1azzB      110  TGWGlpsdsa.....lgisdvlrqvdvpimsnadcdavy......givtd
1bthH      127  TGWGnlketwttnvgkgqpsvlqvvnlpiverpvckdstr.....iritd
1danH      118  SGWGqlldr......gatalelmvlnvprlmtqdclqqsrkvgdspnite
6chaB      112  TGWGltry.......antpdrlqqaslpllsntnckkywg.....tkikd
1try       109  AGWGatseg.....gsstpvnllkvtvpivsratcraqyg....tsaitn
1havA      111  TTVN..............gtpmlisegplkmeekatyvhk...kndgttv
1agjA      116  IGYPfdhkv..........nqmhrseielttlsr................
2sga        96  sgstt..............glrsgsvtgl....natvnyg....ssgivy

5ptp       147  NMFCAGyleg...gkdscQGDSGGPVVcs......gkLQGIVSWGs..gc
1dpo       147  NMVCVG.leg....gdscQGDCGGPVVcn......geLQGIVSWGy..gc
1trnB      147  NMFCVGfleg...gkdscQGDSGGPVVcn......gqLQGVVSWGd..gc
1bit       146  AMFCAGyleg...gkdscQGDSGGPVVcn......geLQGVVSWGy..gc
1fxyA      151  NMFCVGfleg...gkdscQGDSGGPVVcn......gqLQGVVSWGd..gc
1ao5A      158  VMLCAGemgg...gkdtcRDDSGGPLIcd......giLQGTTSYGp.vpc
1fleE      159  SMVCAGg.dg...vrsgcQGDSGGPLHcl..vngqyaVHGVTSFVsrlgc
1dsuB      154  RLMCAEsn.....rrdscKGDSGGPLVcg......gvLEGVVTSGsr.vc
1faxA      155  NMFCAGydtk...qedacQGDSGGPHVtr..fkdtyfVTGIVSWGe..gc
1autC      161  NMLCAGilgd...rqdacEGDSGGPMVas..fhgtwfLVGLVSWGe..gc
1azzB      149  GNICIDstg....gkgtcNGDSGGPLNyn......glTYGITSFGaaagc
1bthH      172  NMFCAGykpdegkrgdacQGDSGGPFVmkspfnnrwyQMGIVSWGe..gc
1danH      162  YMFCAGysdg...skdscKGDSGGPHAth..yrgtwyLTGIVSWGq..gc
6chaB      150  AMICAGas.....gvsscMGDSGGPLVck..kngawtLVGIVSWGs.stc
1try       150  QMFCAGvssg...gkdscQGDSGGPIVds.....sntLIGAVSWGn..gc
1havA      144  DLTVDQawrgk...geglPGMCGGALVss.nqsiqnaILGIHVAGg....
1agjA      140  GLRYYGf.........tvPGNSGSGIFns.....ngeLVGIHSSKv..sh
2sga       124  GMIQTN........vcaqPGDSGGSLFag......stALGLTSGGs..gn

5ptp       186  aqknkpGVYTKVCNYVSWIkqtiasn
1dpo       184  a.pdnpGVYTKVCNYVDWIqdtiaan
1trnB      186  aqknkpGVYTKVYNYVKWIkntiaan
1bit       185  aepgnpGVYAKVCIFNDWLtstmasy
1fxyA      190  aqknkpGVYTKVYNYVKWIkntiaan
1ao5A      198  gkpgvpAIYTNLIKFNSWIkdtmmkn
1fleE      203  nvtrkpTVFTRVSAYISWInnviasn
1dsuB      192  gnrkkpGIYTRVASYAAWIdsvla..
1faxA      198  arkgkyGIYTKVTAFLKWIdrsmktr
1autC      204  gllhnyGVYTKVSRYLDWIhghir..
1azzB      189  .eagypDAFTRVTYFLDWIqtqtgit
1bthH      220  drdgkyGFYTHVFRLKKWIqkvi...
1danH      205  atvghfGVYTRVSQYIEWLqklmrse
6chaB      192  s.tstpGVYARVTALVNWVqqtlaan
1try       190  arpnysGVYASVGALRSFIdtya...
1havA      186  ....nsILVAKLVT.QEMFqnidk..
1agjA      174  ldrehqINYGVGI..GNYVkriinek
2sga       158  crtggtTFYQPVTEALSAYgatv...

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE