Filename: ref1/test1/1csy_ref1.msf
PairWiseDynPrg:
         0   1.69643   1.52679   1.65179   1.65179
   1.69643         0   1.79464   1.86607   1.74107
   1.52679   1.79464         0   1.69643   1.75893
   1.65179   1.86607   1.69643         0         2
   1.65179   1.74107   1.75893         2         0

Score details:
Alignment: ref1/test1/1csy_ref1.msf Score (DiffScore)= 800
   0 sc=       7   -   S E M L H 
   1 sc=       4   -   . . R . . 
   2 sc=       7   -   H M R Q H 
   3 sc=       7   -   E K W D D 
   4 sc=       9   -   K P F A Ea
   5 sc=       9   -   M H H . Ka
   6 sc=       5   -   P P P E Ta
   7 sc=       5   -   W W N W Wa
   8 sc=       4   -   F F I Y N 
   9 sc=       4   -   H F T W V 
  10 sc=       8   -   G G GaG G 
  11 sc=       8   -   K K VaD S 
  12 sc=       4   -   I I .aI S 
  13 sc=       4   -   S P .aS N 
  14 sc=       7   -   R Ra.aRaRa
  15 sc=       8   -   EaAaEaEaNa
  16 sc=      12   -   EaKa.a.a.a
  17 sc=      12   -   SaAaAaEaKa
  18 sc=      12   -   EaEaEaVaAa
  19 sc=       8   -   .aEa.a.a.a
  20 sc=      16   -   QaMaNaNaEa
  21 sc=      16   -   IaLaLaEaNa
  22 sc=      16   -   VaSaLaKaLa
  23 sc=      16   -   LaK LaLaLa
  24 sc=      15   -   IaQ TaRaR 
  25 sc=       8   -   G R R D G 
  26 sc=       8   -   S H G T K 
  27 sc=       7   -   K . V A R 
  28 sc=       4   -   T D D D D 
  29 sc=       4   -   N G G G G 
  30 sc=       7   -   G A SbTbTb
  31 sc=       8   -   KbFbFbFbFb
  32 sc=       8   -   FbLbLbLbLb
  33 sc=       8   -   LbIbAbVbVb
  34 sc=       8   -   IbRbRbRbRb
  35 sc=       8   -   RbEbPbD Eb
  36 sc=       4   -   A S S A S 
  37 sc=       4   -   R E K S S 
  38 sc=       7   -   D S S T K 
  39 sc=       7   -   N A N K Q 
  40 sc=       7   -   N P P M G 
  41 sc=       7   -   G G G H C 
  42 sc=       4   -   . . . G . 
  43 sc=       8   -   S D D D Yb
  44 sc=       8   -   YbFbFbY Ab
  45 sc=       8   -   AbSbTbTbCb
  46 sc=       8   -   LbLbLbLbSb
  47 sc=       8   -   CbSbSbTbVb
  48 sc=       8   -   LbVbVbLbVb
  49 sc=       7   -   L KbRbRbV 
  50 sc=       6   -   H FbRbK . 
  51 sc=       0   -   E G N G D 
  52 sc=       0   -   G N G G G 
  53 sc=       0   -   K DbAbN E 
  54 sc=       0   -   V VbVbNbVb
  55 sc=       0   -   L QbTbKbKb
  56 sc=       0   -   H HbHbLbHb
  57 sc=       0   -   YbFbIbIbCb
  58 sc=       0   -   RbKbKbKbVb
  59 sc=       0   -   IbVbI I Ib
  60 sc=       0   -   D LbQbF N 
  61 sc=       0   -   K RbNbH K 
  62 sc=       7   -   D D T R T 
  63 sc=       7   -   K G G D A 
  64 sc=       7   -   T A D G T 
  65 sc=       7   -   G G Y K G 
  66 sc=      12   -   K K YbY Y 
  67 sc=      14   -   L YbDbG G 
  68 sc=      11   -   S FbL F F 
  69 sc=      11   -   I L Y S Ab
  70 sc=       9   -   P W G D Eb
  71 sc=       7   -   E V G P P 
  72 sc=       7   -   G V E L Y 
  73 sc=      12   -   K KbK T Nb
  74 sc=      12   -   . FbF F Lb
  75 sc=       4   -   . . . . Y 
  76 sc=       4   -   K N A N S 
  77 sc=       4   -   F S T S S 
  78 sc=       8   -   . LaLaVaLa
  79 sc=       8   -   D NaAaVaKa
  80 sc=       8   -   T EaEaEaEa
  81 sc=       8   -   LaLaLaLaLa
  82 sc=       8   -   WaVaVaIaVa
  83 sc=       8   -   QaDaQaNaLa
  84 sc=       8   -   LaYaYaHaHa
  85 sc=       8   -   .aHaYaYaYa
  86 sc=       8   -   .aRaMaRaQa
  87 sc=      13   -   VaSa.aN Ha
  88 sc=      14   -   EaT EaE T 
  89 sc=      11   -   HaS H S S 
  90 sc=      11   -   YaV H L L 
  91 sc=       7   -   S S G A V 
  92 sc=       3   -   . R . . . 
  93 sc=       3   -   . N . . . 
  94 sc=      12   -   Y Q Q Q Qa
  95 sc=      12   -   K Q L Y Ha
  96 sc=      15   -   A I KbN Na
  97 sc=      12   -   D F EbP Da
  98 sc=       7   -   G L K K S 
  99 sc=       7   -   L R N L L 
 100 sc=       4   -   . . G . . 
 101 sc=       7   -   L D D D N 
 102 sc=       7   -   R I V V V 
 103 sc=       4   -   . . I . . 
 104 sc=       4   -   V E E K T 
 105 sc=       4   -   L Q L L L 
 106 sc=       4   -   T V K L A 
 107 sc=       7   -   VbP YbY Yb
 108 sc=       7   -   PbQ PbP Pb
 109 sc=       4   -   C . L V V 
 110 sc=       6   -   Q . . . Y 
 111 sc=       6   -   K Q N S A 

