Filename: ref3/test/1wit_ref3.msf
Score details:
Alignment: ref3/test/1wit_ref3.msf Score (DiffScore)= 4548
   0 sc=      17   -   L L L . . V V S T . . . . R . . . . . 
   1 sc=      19   -   K D D . K KbP K P K L . . V I . . . F 
   2 sc=       0   -   P C . . E PbP P P P I P . LbI . G G Kb
   3 sc=       0   -   KbS . . T YbW V R R Q E F QbQ . A A Ib
   4 sc=       0   -   IbG . . T FbF F F I A I P VbV . V D Eb
   5 sc=      21   -   LbK . V I TbL I T V R I T DbL . S C Tb
   6 sc=      21   -   T A . L W KbN K R Y Q R N IbL T K R Tb
   7 sc=       0   -   A A A P V TbH V T T I K S VbE N K D P 
   8 sc=       0   -   S E D E S IbP P P E R P S P V A N S E 
   9 sc=       0   -   RbN N G P LbS E V K V Q S S S LbI G S 
  10 sc=       0   -   KbT T P S DbN D D T N N H QbS EbT T Rb
  11 sc=       0   -   IbI V V P MbL Q Q H A Q L GbE TbI V Yb
  12 sc=       0   -   KbV T W I DbY T T L T G V EbS WbL W Lb
  13 sc=       0   -   IbV V V L VbA G G D A V A IbP GbG G Ab
  14 sc=       0   -   K V I K E V Y L V L N R L SbQ AbA A Qb
  15 sc=       0   -   A A A V E E E S S M M V Q V I L L L I 
  16 sc=       0   -   G G G G G G S G G G D G G G G G E G G 
  17 sc=       0   -   F N N K S S M G G S E G Q E D Q R H D 
  18 sc=       0   -   T K K A P AbD V V N S V S SbR DbD G S 
  19 sc=       0   -   HbV L V V AbI A A I V A L KbA IbI I Vb
  20 sc=       0   -   NbR R T N RbE S S Q V S I FbW NbN N Sb
  21 sc=       0   -   LbL L L L FbF F F L L F L FbF LbL L Lb
  22 sc=       0   -   EbD E E T DbE V I P S Y E LbD D D N Tb
  23 sc=       0   -   VbV I C C CbC C C C C C C CbC I I I Cb
  24 sc=       0   -   DbP P V S KbT Q Q R D A I QbK P P P Sb
  25 sc=      48   -   .b. . . . .b. . . . . . . .b. S A N .b
  26 sc=      48   -   .b. . . . .b. . . . . . . .b. F F F .b
  27 sc=      60   -   FbI I S S VbV A A V A A A VbV Q Q Q Tb
  28 sc=      60   -   IbS S A D EbS T T H D R E AbT M M M Tb
  29 sc=      51   -   G G G G G G G G G A G G G GbG S S T G 
  30 sc=      48   -   A E E E I Y K E D R F D F D D D E D C 
  31 sc=      48   -   P P P P P P P P P P P P P A P D H D E 
  32 sc=      64   -   D A P R A D V K R R D P T K S IbV I S 
  33 sc=      20   -   P P P S P PbP P P A P P P D A DbE D P 
  34 sc=      22   -   TbT K S K EbT R K E E S T K V DbD E Fb
  35 sc=      36   -   .b. . . . .b. . . . . . . Db. .b. . .b
  36 sc=       0   -   AbV A A I VbV I I I I I I IbI IbI V Fb
  37 sc=       0   -   TbT M R L MbN T V T S V K SbS KbQ R Sb
  38 sc=       0   -   WbW W W W WbW W W W W W W WbW WbW W Wb
  39 sc=       0   -   TbK S T S FbM M N L L R L FbT EbS E Rb
  40 sc=       0   -   V R R R R KbK K K N K K H SbK KbK R Tb
  41 sc=      36   -   . . . . . . . . . . . . . . . Ta. . . 
  42 sc=      68   -   . . . I . . . . . . . . . P E Sa. . Q 
  43 sc=     101   -   G G G S . D N K K N K N P N G DaG G I 
  44 sc=      65   -   D D D S . D G G G E G G S G N K K S D 
  45 sc=      69   -   S Q K T . N D K K N E K D EbD K T T S 
  46 sc=      73   -   G L A P Q P V K K K P K P KbD KbK L P 
  47 sc=      73   -   A F I A L V V V V E I V M LbL IbI V L 
  48 sc=      85   -   AbT M K N K I S S I E S P S P AbA A N 
  49 sc=     132   -   LbA E L . . . . . V D G . P . QbK E . 
  50 sc=      80   -   A T G E . . . . . Q G T . N . FbF F . 
  51 sc=     112   -   P E S Q N E P S N G E Q T Q . R K K . 
  52 sc=     128   -   . G G R G S S Q Q H E S D Q P K N R G 
  53 sc=     142   -   E R R T E R D R R R K R R R N E G K Kb
  54 sc=     151   -   L V I Y L H Y F F H I Y V IbA K S M Vb
  55 sc=     160   -   LbH R G Q F F E E R S T I SbQ E M K Tb
  56 sc=     185   -   VbI T L P QbQ V V V F V Y VbV TbT P Nb
  57 sc=     185   -   DbD E M L IbI I I L N L Q VbT FbF F Eb
  58 sc=     181   -   AbS S D S Db. E E A E E N WbG KbQ L G 
  59 sc=      35   -   .b. . . . .b. . . . . . . Nb. E K K . 
  60 sc=      24   -   .b. . . . .b. . . . . . . . . K D S . 
  61 sc=      33   -   .b. . . . .b. . . . . . . . . D K G . 
  62 sc=      39   -   .b. . . . .b. . . . . . . . . T T A . 
  63 sc=     100   -   KbQ Y . . Yb. F F . . Q . . . YbY F . 
  64 sc=      85   -   S A P . . D . D D . . P . . . KbE E . 
  65 sc=      82   -   . . . . . E . D D . . . . D . LbV I . 
  66 sc=      73   -   . . . . . E V G G . . G . D . F L L . 
  67 sc=     110   -   S D D S E G G A S . D G H D . K K A T 
  68 sc=      22   -   TbL S H N NbG G G N K I N Sb. N N N Tb
  69 sc=       0   -   TbS S T T CbS S S G S S K SbG G G G Sb
  70 sc=       0   -   SbS T V T SbN V V D E I T TbR T T D Tb
  71 sc=       0   -   IbF L L L LbL L L L M L L LbL LbL L Lb
  72 sc=       0   -   FbV V Q T TbR R R L T R Q TbL KbK K Tb
  73 sc=       0   -   FbI I I F IbI I I I I I L IbF IbI I Mb
  74 sc=       0   -   P E D S M SbL Q Q S Y E L YbT K K K N 
  75 sc=       0   -   S S I S S E G P P E R P N N D H H N P 
  76 sc=       0   -   A A A A T V V L L I V V V A L L L L V 
  77 sc=       0   -   K E E K K C V R R K E R G N K K E T S 
  78 sc=      60   -   RaR R P R GaK V T W K A E I E TaR R Fa
  79 sc=      60   -   AaS D S D DaS Q P E E G E D D DaI D Ga
  80 sc=      48   -   .a. . . . .a. R R . . R . . . .a. . .a
  81 sc=       0   -   DaD D D D DaD D D D D D D D N DaH D Na
  82 sc=       0   -   S E S A S DaE E E M E D D A A Q E S E 
  83 sc=       0   -   GbG G G G AbG A A G A A G GbG DbG G H 
  84 sc=       0   -   NbR V T I KbF I I N E P E IbV IbT T Sb
  85 sc=       0   -   YbY Y Y Y YbY Y Y Y Y Y Y YbY YbY Y Yb
  86 sc=       0   -   KbC H V V TbQ E E K S E T KbR KbK N Lb
  87 sc=       0   -   LbI I C C CbC C C C C C C CbC VbV V Cb
  88 sc=       0   -   KbT N L E KbV T V I I V L VbV SbD T Tb
  89 sc=       0   -   VbV L A G AbA A A A A A A VbA IbA V Ab
  90 sc=       0   -   KbT K Q I VbE T S R N E E TbK YbY Y Tb
  91 sc=       0   -   NbN N N N N N N N N N N N AbT DbD S Cb
  92 sc=       0   -   E P E A E S E S N V Q G S E K T S T E 
  93 sc=       0   -   L V A L A L A L V V A V L D A K D N S 
  94 sc=      36   -   GbG G G G G G G G G G G G G G G G G Rb
  95 sc=       8   -   .b. . . . . . . . . . . . Tb. . . . .b
  96 sc=      96   -   EbE E T I EbN E E K E D S QbP K K T Kb
  97 sc=     108   -   DbD A A S AbA I I D A A A SbL NbN R Lb
  98 sc=     105   -   EbS H Q R TbQ N S T E . R EbQ VbV I Eb
  99 sc=      91   -   AbA A K K CbT T V A A V H AbT LbL L Kb
 100 sc=      91   -   IbT S Q S TbS S S D I S A TbR EbE D Gb
 101 sc=      91   -   FbL I V V AbA A T T V A Y VbT KbE K Ib
 102 sc=      91   -   EbH K E E EbQ K R F L D Y NbV IbT A Qb
 103 sc=      91   -   VbV V V L LbL L L V L A V VbL FbF L Vb
 104 sc=      91   -   IbR K I I LbI S T Y K T T KbN DbH D Eb
 105 sc=      91   -   VbV V V I VbV V V P V L V IbV LbL L Ib
 106 sc=      82   -   Qb. . . . EbP . . . . . E Fb. KbS R Yb
 107 sc=      66   -   . . . . . Tb. . . . . . . Q . IbL I . 
 108 sc=      30   -   . . . . . Mb. . . . . . . . . QbL L . 

