Filename: ref3/test/1wit_ref3.msf
Score details:
Alignment: ref3/test/1wit_ref3.msf Score (DiffScore)= 3662
   0 sc=      17   -   LLL..VVST....R.....
   1 sc=      18   -   KDD.KKPKPKL..VI...F
   2 sc=       0   -   PC..EPPPPPIP.LI.GGK
   3 sc=       0   -   KS..TYWVRRQEFQQ.AAI
   4 sc=       0   -   IG..TFFFFIAIPVV.VDE
   5 sc=      17   -   LK.VITLITVRITDL.SCT
   6 sc=      18   -   TA.LWKNKRYQRNILTKRT
   7 sc=       0   -   AAAPVTHVTTIKSVENKDP
   8 sc=       0   -   SEDESIPPPERPSPVANSE
   9 sc=       0   -   RNNGPLSEVKVQSSSLIGS
  10 sc=       0   -   KTTPSDNDDTNNHQSETTR
  11 sc=       0   -   IIVVPMLQQHAQLGETIVY
  12 sc=       0   -   KVTWIDYTTLTGVESWLWL
  13 sc=       0   -   IVVVLVAGGDAVAIPGGGA
  14 sc=       0   -   KVIKEVYLVLNRLSQAAAQ
  15 sc=       0   -   AAAVEEESSMMVQVILLLI
  16 sc=       0   -   GGGGGGSGGGDGGGGGEGG
  17 sc=       0   -   FNNKSSMGGSEGQEDQRHD
  18 sc=       0   -   TKKAPADVVNSVSSRDDGS
  19 sc=       0   -   HVLVVAIAAIVALKAIIIV
  20 sc=       0   -   NRRTNRESSQVSIFWNNNS
  21 sc=       0   -   LLLLLFFFFLLFLFFLLLL
  22 sc=       0   -   EDEETDEVIPSYELDDDNT
  23 sc=       0   -   VVICCCCCCCCCCCCIIIC
  24 sc=       0   -   DPPVSKTQQRDAIQKPPPS
  25 sc=      48   -   ...............SAN.
  26 sc=      48   -   ...............FFF.
  27 sc=      48   -   FIISSVVAAVAAAVVQQQT
  28 sc=      48   -   ISSADESTTHDREATMMMT
  29 sc=      48   -   GGGGGGGGGAGGGGGSSTG
  30 sc=      48   -   AEEEIYKEDRFDFDDDEDC
  31 sc=      48   -   PPPPPPPPPPPPPAPDHDE
  32 sc=      48   -   DAPRADVKRRDPTKSIVIS
  33 sc=      18   -   PPPSPPPPPAPPPDADEDP
  34 sc=      18   -   TTKSKETRKEESTKVDDEF
  35 sc=      18   -   .............D.....
  36 sc=       0   -   AVAAIVVIIIIIIIIIIVF
  37 sc=       0   -   TTMRLMNTVTSVKSSKQRS
  38 sc=       0   -   WWWWWWWWWWWWWWWWWWW
  39 sc=       0   -   TKSTSFMMNLLRLFTESER
  40 sc=       0   -   VRRRRKKKKNKKHSKKKRT
  41 sc=      18   -   ...............T...
  42 sc=      62   -   ...I.........PES..Q
  43 sc=      86   -   GGGS.DNKKNKNPNGDGGI
  44 sc=      65   -   DDDS.DGGGEGGSGNKKSD
  45 sc=      65   -   SQKT.NDKKNEKDEDKTTS
  46 sc=      65   -   GLAPQPVKKKPKPKDKKLP
  47 sc=      65   -   AFIALVVVVEIVMLLIIVL
  48 sc=      65   -   ATMKNKISSIESPSPAAAN
  49 sc=     106   -   LAEL.....VDG.P.QKE.
  50 sc=      72   -   ATGE.....QGT.N.FFF.
  51 sc=     112   -   PESQNEPSNGEQTQ.RKK.
  52 sc=     128   -   .GGRGSSQQHESDQPKNRG
  53 sc=     126   -   ERRTERDRRRKRRRNEGKK
  54 sc=     126   -   LVIYLHYFFHIYVIAKSMV
  55 sc=     126   -   LHRGQFFEERSTISQEMKT
  56 sc=     126   -   VITLPQQVVVFVYVVTTPN
  57 sc=     126   -   DDEMLIIIILNLQVTFFFE
  58 sc=     132   -   ASSDSD.EEAEENWGKQLG
  59 sc=      22   -   .............N.EKK.
  60 sc=      24   -   ...............KDS.
  61 sc=      33   -   ...............DKG.
  62 sc=      39   -   ...............TTA.
  63 sc=      73   -   KQY..Y.FF..Q...YYF.
  64 sc=      69   -   SAP..D.DD..P...KEE.
  65 sc=      66   -   .....E.DD....D.LVI.
  66 sc=      73   -   .....EVGG..G.D.FLL.
  67 sc=     110   -   SDDSEGGAS.DGHD.KKAT
  68 sc=      18   -   TLSHNNGGGNKINS.NNNT
  69 sc=       0   -   TSSTTCSSSGSSKSGGGGS
  70 sc=       0   -   SSTVTSNVVDEITTRTTDT
  71 sc=       0   -   IFLLLLLLLLMLLLLLLLL
  72 sc=       0   -   FVVQTTRRRLTRQTLKKKT
  73 sc=       0   -   FIIIFIIIIIIILIFIIIM
  74 sc=       0   -   PEDSMSLQQSYELYTKKKN
  75 sc=       0   -   SSISSEGPPERPNNDHHNP
  76 sc=       0   -   AAAATVVLLIVVVALLLLV
  77 sc=       0   -   KEEKKCVRRKERGNKKETS
  78 sc=      48   -   RRRPRGKVTWKAEIETRRF
  79 sc=      48   -   ASDSDDSQPEEGEDDDIDG
  80 sc=      48   -   .......RR..R.......
  81 sc=       0   -   DDDDDDDDDDDDDDNDHDN
  82 sc=       0   -   SESASDEEEMEDDAAQESE
  83 sc=       0   -   GGGGGAGAAGAAGGGDGGH
  84 sc=       0   -   NRVTIKFIINEPEIVITTS
  85 sc=       0   -   YYYYYYYYYYYYYYYYYYY
  86 sc=       0   -   KCHVVTQEEKSETKRKKNL
  87 sc=       0   -   LIICCCCCCCCCCCCVVVC
  88 sc=       0   -   KTNLEKVTVIIVLVVSDTT
  89 sc=       0   -   VVLAGAAAAAAAAVAIAVA
  90 sc=       0   -   KTKQIVETSRNEETKYYYT
  91 sc=       0   -   NNNNNNNNNNNNNATDDSC
  92 sc=       0   -   EPEAESESNVQGSEKTSTE
  93 sc=       0   -   LVALALALVVAVLDAKDNS
  94 sc=      18   -   GGGGGGGGGGGGGGGGGGR
  95 sc=       4   -   .............T.....
  96 sc=      76   -   EEETIENEEKEDSQPKKTK
  97 sc=      76   -   DDAASAAIIDAAASLNNRL
  98 sc=      74   -   ESHQRTQNSTE.REQVVIE
  99 sc=      63   -   AAAKKCTTVAAVHATLLLK
 100 sc=      63   -   ITSQSTSSSDISATREEDG
 101 sc=      63   -   FLIVVAAATTVAYVTKEKI
 102 sc=      63   -   EHKEEEQKRFLDYNVITAQ
 103 sc=      63   -   VVVVLLLLLVLAVVLFFLV
 104 sc=      63   -   IRKIILISTYKTTKNDHDE
 105 sc=      63   -   VVVVIVVVVPVLVIVLLLI
 106 sc=      54   -   Q....EP.....EF.KSRY
 107 sc=      48   -   .....T.......Q.ILI.
 108 sc=      21   -   .....M.........QLL.

