Filename: ref3/test/1wit_ref3.msf
Score details:
Alignment: ref3/test/1wit_ref3.msf Score (DiffScore)= 5419
   0 sc=      75   -   L..V.VVST...FR..GGF
   1 sc=      81   -   K..LKKPKPKL.PVI.AAK
   2 sc=      51   -   P...EPPPPPIP.LI.V.I
   3 sc=      59   -   K...TYWVRRQE.QQ...E
   4 sc=      55   -   I...TFFFFIAI.VV....
   5 sc=      63   -   LLL.ITLITVRITDLTS.T
   6 sc=      64   -   TDD.WKNKRYQRNILNKDT
   7 sc=      30   -   .C...............C.
   8 sc=      32   -   .S...............R.
   9 sc=      15   -   .G.................
  10 sc=      17   -   .K.................
  11 sc=      18   -   .A.................
  12 sc=      18   -   AAAPVTHVTTIKSVEAKDP
  13 sc=      18   -   SEDESIPPPERPSPV.NSE
  14 sc=       0   -   RNNGPLSEVKVQSSSLIGS
  15 sc=       0   -   KTTPSDNDDTNNHQSETTR
  16 sc=       0   -   IIVVPMLQQHAQLGETIVY
  17 sc=       0   -   KVTWIDYTTLTGVESWLWL
  18 sc=       0   -   IVVVLVAGGDAVAIPGGGA
  19 sc=       0   -   KVIKEVYLVLNRLSQAAAQ
  20 sc=       0   -   AAAVEEESSMMVQVILLLI
  21 sc=       0   -   GGGGGGSGGGDGGGGGEGG
  22 sc=       0   -   FNNKSSMGGSEGQEDQRHD
  23 sc=       0   -   TKKAPADVVNSVSSRDDGS
  24 sc=       0   -   HVLVVAIAAIVALKAIIIV
  25 sc=       0   -   NRRTNRESSQVSIFWNNNS
  26 sc=       0   -   LLLLLFFFFLLFLFFLLLL
  27 sc=       0   -   EDEETDEVIPSYELDDDNT
  28 sc=       0   -   VVICCCCCCCCCCCCIIIC
  29 sc=       0   -   DPPVSKTQQRDAIQKPPPS
  30 sc=       0   -   FIISSVVAAVAAAVVSANT
  31 sc=      48   -   ...............FFF.
  32 sc=      48   -   ...............QQQ.
  33 sc=      48   -   ...............MMM.
  34 sc=      48   -   ...............SST.
  35 sc=      48   -   ...............DED.
  36 sc=       3   -   ...............DHD.
  37 sc=       0   -   ...............IVI.
  38 sc=      48   -   ...............DED.
  39 sc=      48   -   ...............DDE.
  40 sc=      48   -   ...............IIV.
  41 sc=      48   -   ...............KQR.
  42 sc=      48   -   ...............WWW.
  43 sc=      48   -   ...............ESE.
  44 sc=      48   -   ...............KKR.
  45 sc=      48   -   ISSADESTTHDREATTGGT
  46 sc=      50   -   GGGGGGGGGAGGGGGSKSG
  47 sc=      48   -   AEEEIYKEDRFDFDDD..C
  48 sc=      50   -   PPPPPPPPPPPPPAPK..E
  49 sc=      48   -   DAPRADVKRRDPTKSKTTS
  50 sc=      63   -   PPPSPPPPPAPPPDAKKLP
  51 sc=      63   -   TTKSKETRKEESTKVIIVF
  52 sc=      18   -   .............D.....
  53 sc=      48   -   AVAAIVVIIIIIIIIAAAF
  54 sc=      48   -   TTMRLMNTVTSVKSSQKES
  55 sc=      48   -   WWWWWWWWWWWWWWWFFFW
  56 sc=      48   -   TKSTSFMMNLLRLFTRKKR
  57 sc=      48   -   VRRRRKKKKNKKHSKKNRT
  58 sc=      48   -   GGGIQDNKKNKNPPEEGKQ
  59 sc=     125   -   DDDSLDGGGEGGSNGKSMI
  60 sc=     124   -   SQKSNNDKKNEKDGNEM.D
  61 sc=     127   -   GLATNPVKKKPKPEDTTKS
  62 sc=      34   -   A...G..............
  63 sc=     128   -   AF.PE..VVEIVMKD..PP
  64 sc=     117   -   LTIALVVSSIESPLLFFFL
  65 sc=     117   -   AAMKQKISNVDGTSPKQLN
  66 sc=      87   -   P..LP........PP...G
  67 sc=     113   -   ETEE.EP..QGT.NNEKKK
  68 sc=      68   -   LEGQ.SS..GEQ.QAKDS.
  69 sc=      10   -   ..S................
  70 sc=      60   -   .GGR.RDQQHESDQQDKG.
  71 sc=      70   -   .RRT.HYRRRKRRR.TTA.
  72 sc=      84   -   .VIY.FFFFHIYVI.YYF.
  73 sc=      97   -   .HRG.QQEERSTIS.KEE.
  74 sc=     110   -   L..L.IIVVVFVYV.LVI.
  75 sc=      86   -   VIT..D.......V....V
  76 sc=      77   -   DDE..Y.......W....T
  77 sc=      63   -   ASS..D.......N....N
  78 sc=     127   -   KQYMLEVIILNLQDVFLLE
  79 sc=      91   -   SAPDSE.EE.EEND....G
  80 sc=      18   -   .......FF..........
  81 sc=      16   -   .......DD..........
  82 sc=      10   -   .......DD..........
  83 sc=       8   -   .......GG..........
  84 sc=     133   -   SDDSEGGASADQHDTKKAT
  85 sc=      18   -   TLSHNNGGGNKPNSGNNNT
  86 sc=      18   -   TSSTTCSSSGSGKSGGGGS
  87 sc=      18   -   SSTVTSNVVDEGTTRTTDT
  88 sc=      18   -   IFLLLLLLLLMILLLLLLL
  89 sc=      18   -   FVVQTTRRRLTSQTLKKKT
  90 sc=      18   -   FIIIFIIIIIIILIFIIIM
  91 sc=      34   -   .......QQ..........
  92 sc=      50   -   PEDSMSLPPSYLLYTKKKN
  93 sc=      50   -   SSISSEGLLERRNNDHHNP
  94 sc=      50   -   AAAATVVRRIVIVALLLLV
  95 sc=      50   -   KEEKKCVVTKEEGNKKETS
  96 sc=      18   -   ...........P.......
  97 sc=      18   -   ...........V.......
  98 sc=      18   -   ...........R.......
  99 sc=       2   -   ...........A.......
 100 sc=       0   -   RRRPRGKQPWKGEIETRRF
 101 sc=       0   -   ASDSDDSRREEREDDDIDG
 102 sc=       0   -   DDDDDDDDDDDDDDNDHDN
 103 sc=       0   -   SESASDEEEMEDDAAQESE
 104 sc=       0   -   GGGGGAGAAGAAGGGDGGH
 105 sc=       0   -   NRVTIKFIINEPEIVITTS
 106 sc=       0   -   YYYYYYYYYYYYYYYYYYY
 107 sc=       0   -   KCHVVTQEEKSETKRKKNL
 108 sc=       0   -   LIICCCCCCCCCCCCVVVC
 109 sc=       0   -   KTNLEKVTVIIVLVVSDTT
 110 sc=       0   -   VVLAGAAAAAAAAVAIAVA
 111 sc=       0   -   KTKQIVETSRNEETKYYYT
 112 sc=       0   -   NNNNNNNNNNNNNATDDSC
 113 sc=       0   -   EPEAESESNVQGSEKTSTE
 114 sc=       0   -   LVALALALVVAVLDAKDNS
 115 sc=      18   -   GGGGGGGGGGGGGGGGGGR
 116 sc=      89   -   EEETIENEEKEDSTPKKTK
 117 sc=      89   -   DDAASAAIIDAAAQLNNRL
 118 sc=      89   -   ESHQRTQNSTEVRSQVVIE
 119 sc=      18   -   ...........S.......
 120 sc=      18   -   ...........A.......
 121 sc=      18   -   ...........D.......
 122 sc=      90   -   AAAKKCTTVAAAHETLLLK
 123 sc=      90   -   ITSQSTSSSDITAAREEDG
 124 sc=      90   -   FLIVVAAATTVLYTTKEKI
 125 sc=      90   -   EHKEEEQKRFL.YVVITAQ
 126 sc=      18   -   .............N.....
 127 sc=      77   -   VVVVLLLLLVL.VVLFFLV
 128 sc=      77   -   IRKIILISTYK.TKNDHDE
 129 sc=      76   -   VVVVIVVVVPV.VIVLLLI
 130 sc=      54   -   Q....EP.....EF.KSRY
 131 sc=      48   -   .....T.......Q.ILI.
 132 sc=      21   -   .....M.........QLL.

