Filename: ref3/test/1wit_ref3.msf
Score details:
Alignment: ref3/test/1wit_ref3.msf Score (DiffScore)= 3966
   0 sc=       0   -   LL...VVST....R.....
   1 sc=       0   -   KD..KKPKPKL..VI...F
   2 sc=       0   -   PC..EPPPPPIP.LI.GGK
   3 sc=       0   -   KS..TYWVRRQEFQQ.AAI
   4 sc=       0   -   IG..TFFFFIAIPVV.VDE
   5 sc=       0   -   LKLVITLITVRITDL.SCT
   6 sc=       0   -   TADLWKNKRYQRNILTKRT
   7 sc=       0   -   AAAPVTHVTTIKSVENKDP
   8 sc=       0   -   SEDESIPPPERPSPVANSE
   9 sc=       0   -   RNNGPLSEVKVQSSSLIGS
  10 sc=       0   -   KTTPSDNDDTNNHQSETTR
  11 sc=       0   -   IIVVPMLQQHAQLGETIVY
  12 sc=       0   -   KVTWIDYTTLTGVESWLWL
  13 sc=       0   -   IVVVLVAGGDAVAIPGGGA
  14 sc=       0   -   KVIKEVYLVLNRLSQAAAQ
  15 sc=       0   -   AAAVEEESSMMVQVILLLI
  16 sc=       0   -   GGGGGGSGGGDGGGGGEGG
  17 sc=       0   -   FNNKSSMGGSEGQEDQRHD
  18 sc=       0   -   TKKAPADVVNSVSSRDDGS
  19 sc=       0   -   HVLVVAIAAIVALKAIIIV
  20 sc=       0   -   NRRTNRESSQVSIFWNNNS
  21 sc=       0   -   LLLLLFFFFLLFLFFLLLL
  22 sc=       0   -   EDEETDEVIPSYELDDDNT
  23 sc=       0   -   VVICCCCCCCCCCCCIIIC
  24 sc=       0   -   DPPVSKTQQRDAIQKPPPS
  25 sc=       0   -   FIISSVVAAVAAAVVSANT
  26 sc=      48   -   ...............FFF.
  27 sc=      48   -   ...............QQQ.
  28 sc=      48   -   ISSADESTTHDREATMMMT
  29 sc=      48   -   GGGGGGGGGAGGGGGSSTG
  30 sc=      48   -   AEEEIYKEDRFDFDDDEDC
  31 sc=      48   -   PPPPPPPPPPPPPAPDHDE
  32 sc=      48   -   DAPRADVKRRDPTKSIVIS
  33 sc=      18   -   PPPSPPPPPAPPPDADEDP
  34 sc=      18   -   TTKSKETRKEESTKVDDEF
  35 sc=      18   -   .............D.....
  36 sc=       0   -   AVAAIVVIIIIIIIIIIVF
  37 sc=       0   -   TTMRLMNTVTSVKSSKQRS
  38 sc=       0   -   WWWWWWWWWWWWWWWWWWW
  39 sc=       0   -   TKSTSFMMNLLRLFTESER
  40 sc=       0   -   VRRRRKKKKNKKHSKKKRT
  41 sc=      34   -   .............P.T...
  42 sc=      35   -   GGGIQDNKKNKNPNESGGQ
  43 sc=      99   -   DDDS.DGGGEGGSGG.KSI
  44 sc=     101   -   SQKS.NDKKNEKDENDTTD
  45 sc=     101   -   GLAT.PVKKKPKPKDKKLS
  46 sc=     101   -   AFIPLVVVVEIVMLDKIVP
  47 sc=     101   -   ATMANKISSIESPSLKAAL
  48 sc=     101   -   LAEKNEPSNVDGTPPIKEN
  49 sc=     143   -   ATGLGSS..QGTDNPAFFG
  50 sc=     141   -   PESEERD..GEQRQNQKKK
  51 sc=     104   -   EGG...YQQH.S.QAFNRV
  52 sc=      66   -   .RR....RRR.R.R.R.K.
  53 sc=      97   -   .VIQ.H.FF.EY.I.K.M.
  54 sc=     109   -   LHRR.F.EE.KT.S.EGK.
  55 sc=     108   -   LITT.Q.VV..V.V.KS..
  56 sc=     124   -   V..YLI.II.ILVV.EM..
  57 sc=     114   -   D..GQD.EE.SEI..TTP.
  58 sc=      54   -   A..L......F.Y..FFF.
  59 sc=       0   -   ...............KQL.
  60 sc=      12   -   ...............EKK.
  61 sc=      24   -   ...............KDS.
  62 sc=      33   -   ...............DKG.
  63 sc=      39   -   ...............TTA.
  64 sc=     118   -   .DE..YFFFH...W.YYFT
  65 sc=     131   -   .SS.PDQDDR.Q.N.KEEN
  66 sc=     136   -   KQYMLEIDDVNPQDQLVIE
  67 sc=     138   -   SAPDSEVGGLEGNDVFLLG
  68 sc=     132   -   SDDSEGGASADGHDTKKAT
  69 sc=       0   -   TLSHNNGGGNKINSGNNNT
  70 sc=       0   -   TSSTTCSSSGSSKSGGGGS
  71 sc=       0   -   SSTVTSNVVDEITTRTTDT
  72 sc=       0   -   IFLLLLLLLLMLLLLLLLL
  73 sc=       0   -   FVVQTTRRRLTRQTLKKKT
  74 sc=       0   -   FIIIFIIIIIIILIFIIIM
  75 sc=       0   -   PEDSMSLQQSYELYTKKKN
  76 sc=       0   -   SSISSEGPPERPNNDHHNP
  77 sc=       0   -   AAAATVVLLIVVVALLLLV
  78 sc=      48   -   .......RR..R.......
  79 sc=      48   -   KEEKKCVVTKEAGNKKETS
  80 sc=       0   -   RRRPRGKQPWKGEIETRRF
  81 sc=       0   -   ASDSDDSRREEREDDDIDG
  82 sc=       0   -   DDDDDDDDDDDDDDNDHDN
  83 sc=       0   -   SESASDEEEMEDDAAQESE
  84 sc=       0   -   GGGGGAGAAGAAGGGDGGH
  85 sc=       0   -   NRVTIKFIINEPEIVITTS
  86 sc=       0   -   YYYYYYYYYYYYYYYYYYY
  87 sc=       0   -   KCHVVTQEEKSETKRKKNL
  88 sc=       0   -   LIICCCCCCCCCCCCVVVC
  89 sc=       0   -   KTNLEKVTVIIVLVVSDTT
  90 sc=       0   -   VVLAGAAAAAAAAVAIAVA
  91 sc=       0   -   KTKQIVETSRNEETKYYYT
  92 sc=       0   -   NNNNNNNNNNNNNATDDSC
  93 sc=       0   -   EPEAESESNVQGSEKTSTE
  94 sc=       0   -   LVALALALVVAVLDAKDNS
  95 sc=      18   -   GGGGGGGGGGGGGGGGGGR
  96 sc=      89   -   EEETIENEEKEDSTPKKTK
  97 sc=      89   -   DDAASAAIIDAAAQLNNRL
  98 sc=      89   -   ESHQRTQNSTEVRSQVVIE
  99 sc=      89   -   AAAKKCTTVAASHETLLLK
 100 sc=      89   -   ITSQSTSSSDIAAAREEDG
 101 sc=      18   -   .............T.....
 102 sc=      76   -   FLIVVAAATTVDYVTKEKI
 103 sc=      76   -   EHKEEEQKRFLAYNVITAQ
 104 sc=      76   -   VVVVLLLLLVLTVVLFFLV
 105 sc=      76   -   IRKIILISTYKLTKNDHDE
 106 sc=      76   -   VVVVIVVVVPV.VIVLLLI
 107 sc=      54   -   Q....EP.....EF.KSRY
 108 sc=      48   -   .....T.......Q.ILI.
 109 sc=      21   -   .....M.........QLL.

