Filename: ref3/test/1wit_ref3.msf
Score details:
Alignment: ref3/test/1wit_ref3.msf Score (DiffScore)= 13168
   0 sc=     136   -   L L L V K V V S T K L P F R I T G G F 
   1 sc=     211   -   K D D L E KbP K P P I E P V I N A A Kb
   2 sc=     244   -   P C A P T PbP P P R Q I T LbQ A V D Ib
   3 sc=     319   -   KbS D E T YbW V R I A I N QbV LbS C Eb
   4 sc=     319   -   IbG N G I FbF F F V R R S VbL EbK R Tb
   5 sc=     319   -   LbK T P W TbL I T Y Q K S DbL TbK D Tb
   6 sc=     205   -   T A . . V KbN K R T I . S IbE .bN S P 
   7 sc=     253   -   A A V V S TbH V T E R P H VbV WbI G E 
   8 sc=     220   -   S E T W P IbP P P K V Q L P S GbT T S 
   9 sc=     283   -   RbN V V S LbS E V T N N V S S AbI V Rb
  10 sc=     271   -   KbT I K P DbN D D H A Q A QbE L L W Yb
  11 sc=     269   -   IbI . . I MbL Q Q L T G . GbS G G G Lb
  12 sc=     271   -   KbV . . L DbY T T D A . . EbP Q . A Ab
  13 sc=      18   -   .b. . . . .b. . . . . . . .b. . . L .b
  14 sc=      18   -   .b. . . . .b. . . . . . . .b. . . G .b
  15 sc=     164   -   IbV . . . VbA . . . . . . .b. . . H .b
  16 sc=     219   -   K V . . E V Y G G L N V L IbQ DbA G Qb
  17 sc=     179   -   A A A V E E E L V M M R Q SbI IbL I I 
  18 sc=     137   -   G G G G G G S S S G D V G V G NbE N G 
  19 sc=     137   -   F N N K S S M G G S E G Q G D LbR L D 
  20 sc=     104   -   T K K A P AbD G G N S G S E R D D N S 
  21 sc=     176   -   HbV L V V AbI V V I V V L SbA I I I Vb
  22 sc=     176   -   NbR R T N RbE A A Q V A I KbW P N P Sb
  23 sc=     176   -   LbL L L L FbF S S L L S L FbF S L N Lb
  24 sc=     176   -   EbD E E T DbE F F P S F E FbD F D F Tb
  25 sc=     141   -   .bV I . . .b. V I . . Y . Lb. . I . .b
  26 sc=     136   -   VbP P C C CbC C C C C C C CbC Q P Q Cb
  27 sc=      18   -   .b. . . . .b. . . . . . . .b. . A . .b
  28 sc=     138   -   DbI I V S KbT Q Q R D A I QbK M F M Sb
  29 sc=     138   -   FbS S S S VbV A A V A A A VbV S Q T Tb
  30 sc=     134   -   Ib. . A D EbS T T H D R E AbT . M . Tb
  31 sc=      59   -   G G G G G G G G G A G G G GbG D S D G 
  32 sc=      50   -   A E E E I Y K E D R F D F D D D E D C 
  33 sc=     101   -   P P P P P P P P P P P P P A P IbH I E 
  34 sc=      18   -   . . . . . . . . . . . . . K . .b. . . 
  35 sc=     116   -   D A P R A D V K R R D P T D S DbV D S 
  36 sc=      40   -   P P P S P PbP P P A P P P K A .bE . P 
  37 sc=       0   -   TbT K S K EbT R K E E S T DbV DbD E Fb
  38 sc=       0   -   AbV A A I VbV I I I I I I IbI IbI V Fb
  39 sc=       0   -   TbT M R L MbN T V T S V K SbS KbQ R Sb
  40 sc=       0   -   WbW W W W WbW W W W W W W WbW WbW W Wb
  41 sc=       0   -   TbK S T S FbM M N L L R L FbT EbS E Rb
  42 sc=       0   -   V R R R R KbK K K N K K H SbK KbK R Tb
  43 sc=       0   -   G G G I Q D N K K N K N P P E TaG G Q 
  44 sc=      43   -   . D . . . . . . . . . . . N . Sa. . . 
  45 sc=      18   -   . . . . . . . . . . . . . G . .a. . . 
  46 sc=     211   -   D Q D S L D G G G E G G S EbG DaK S I 
  47 sc=     169   -   S L K S N N D K K N E K D KbN K T T D 
  48 sc=     169   -   G F A T N P V K K K P K P LbD K K L S 
  49 sc=     164   -   A T I P . V V V V E I V M S D KbI V P 
  50 sc=      34   -   . . . . . . . . . . . S . . . .bA . . 
  51 sc=      17   -   . . . . . . . . . . . . . . . .bK . . 
  52 sc=       2   -   . . . . . . . . . . . . . . . .bF . . 
  53 sc=       2   -   . . . . . . . . . . . . . . . .bK . . 
  54 sc=       2   -   . . . . . . . . . . . . . . . .bN . . 
  55 sc=       2   -   . . . . . . . . . . . . . . . .bG . . 
  56 sc=       2   -   . . . . . . . . . . . . . . . .bS . . 
  57 sc=       2   -   . . . . . . . . . . . . . . . .bM . . 
  58 sc=     229   -   AbA M A G K I S S I E G P P L IbT A L 
  59 sc=     229   -   LbT E K E E P S N V D T T N P AbF E N 
  60 sc=     201   -   A E G L L S S Q Q Q G Q D Q P QbQ F G 
  61 sc=     127   -   P G S E . R D . . G E S . Q . FbK K . 
  62 sc=     184   -   E R G Q Q H Y R R H E R R R N R D R Kb
  63 sc=     211   -   L V R R P F F F F R K Y V IbA K K K Vb
  64 sc=     247   -   LbH I T L QbQ E E H I T I SbQ E T M Tb
  65 sc=     247   -   VbI R Y S IbI V V R S V Y VbV K Y K Nb
  66 sc=     247   -   DbD T G E DbV I I V F L Q VbT E E P Eb
  67 sc=     185   -   .bS E . . Yb. E E . . E . Wb. TbV F . 
  68 sc=     105   -   .b. S . . D . F F . . Q . Nb. Fb. L . 
  69 sc=      13   -   .b. . . . . . . . . . . . . . Kb. K . 
  70 sc=      15   -   .b. . . . . . . . . . . . . . E . S . 
  71 sc=      22   -   .b. . . . . . . . . . . . . . K . G . 
  72 sc=      13   -   .b. . . . . . . . . . . . . . D . . . 
  73 sc=      28   -   .b. . . . . . . . . . . . . . T . A . 
  74 sc=      80   -   .b. . . . . . . . . . . . . . Yb. F . 
  75 sc=      85   -   .b. . . . . . . . . . . . . . Kb. E . 
  76 sc=     105   -   .b. . . . E . D D . . . . . . Lb. I . 
  77 sc=     170   -   AbQ Y L . E . D D L N P N D . F L L G 
  78 sc=     158   -   KbA P M . G . G G A E G H D . K K A T 
  79 sc=     188   -   S D D D N NbG A S N D G N D G N N N Tb
  80 sc=     194   -   S L S S T CbG G G G K I K SbG G G G Sb
  81 sc=     235   -   TbS S H T SbS S S D S S T SbR T T D Tb
  82 sc=     187   -   TbS T T . .bN V V . E I . Tb. . . . .b
  83 sc=      85   -   Sb. . V . .b. . . . . . . .b. . . . .b
  84 sc=       0   -   IbF L L L LbL L L L M L L LbL LbL L Lb
  85 sc=       0   -   FbV V Q T TbR R R L T R Q TbL KbK K Tb
  86 sc=       0   -   FbI I I F IbI I I I I I L IbF IbI I Mb
  87 sc=       0   -   P E D S M SbL Q Q S Y E L YbT K K K N 
  88 sc=       0   -   S S I S S E G P P E R P N N D H H N P 
  89 sc=       0   -   A A A A T V V L L I V V V A L L L L V 
  90 sc=       0   -   K E E K K C V R R K E R G N K K E T S 
  91 sc=      84   -   RaR R P R GaK V T W K A E I E TaR R Fa
  92 sc=      84   -   AaS D S D DaS Q P E E G E D D DaI D Ga
  93 sc=      84   -   DaD D D D DaD R R D D R D D N DaH D Na
  94 sc=      48   -   . . . . . .a. D D . . D . . . . . . . 
  95 sc=       0   -   S E S A S DaE E E M E D D A A Q E S E 
  96 sc=       0   -   GbG G G G AbG A A G A A G GbG DbG G H 
  97 sc=       0   -   NbR V T I KbF I I N E P E IbV IbT T Sb
  98 sc=       0   -   YbY Y Y Y YbY Y Y Y Y Y Y YbY YbY Y Yb
  99 sc=       0   -   KbC H V V TbQ E E K S E T KbR KbK N Lb
 100 sc=       0   -   LbI I C C CbC C C C C C C CbC VbV V Cb
 101 sc=       0   -   KbT N L E KbV T V I I V L VbV SbD T Tb
 102 sc=       0   -   VbV L A G AbA A A A A A A VbA IbA V Ab
 103 sc=       0   -   KbT K Q I VbE T S R N E E TbK YbY Y Tb
 104 sc=       0   -   NbN N N N N N N N N N N N AbT DbD S Cb
 105 sc=       0   -   E P E A E S E S N V Q G S E K T S T E 
 106 sc=       0   -   L V A L A L A L V V A V L D A K D N S 
 107 sc=      72   -   GbG G G G G G G G G G G G G G G G G Rb
 108 sc=      16   -   .b. . . . . . . . . . . . Tb. K K T .b
 109 sc=      64   -   .b. . . . . . . . . . . . Qb. . . . .b
 110 sc=      78   -   .b. . . . . . . . . . . . Sb. NbN R .b
 111 sc=     128   -   EbE E T I EbN E E K E D S EbP VbV I Kb
 112 sc=     128   -   DbD A A S AbA I I D A A A AbL LbL L Lb
 113 sc=     129   -   EbS H Q R TbQ N S T E . R TbQ EbE D Eb
 114 sc=     101   -   AbA A K K CbT T V A A V H VbT KbE K Kb
 115 sc=     101   -   IbT S Q S TbS S S D I S A NbR IbT A Gb
 116 sc=     101   -   FbL I V V AbA A T T V A Y VbT FbF L Ib
 117 sc=     101   -   EbH K E E EbQ K R F L D Y KbV DbH D Qb
 118 sc=     220   -   Vb. . . . LbL . . . . . V .b. LbL L Vb
 119 sc=     261   -   IbV V V L LbI L L V L A T IbL KbS R Eb
 120 sc=      72   -   .b. . . . Vb. . . . . . . .b. .b. . .b
 121 sc=      36   -   .b. . . . Eb. . . . . . . .b. .b. . .b
 122 sc=     293   -   VbR K I I TbV S T Y K T V FbN IbL I Ib
 123 sc=     251   -   QbV V V I MbP V V P V L E Q V QbL L Yb

