Filename: ref3/test/1wit_ref3.msf
Score details:
Alignment: ref3/test/1wit_ref3.msf Score (DiffScore)= 7105
   0 sc=     136   -   LLLVKVVSTKLPFRITGGF
   1 sc=     136   -   KDDLEKPKPPIEPVINAAK
   2 sc=     136   -   PCAPTPPPPRQITLQAVDI
   3 sc=     136   -   KSDETYWVRIAINQVLSCE
   4 sc=     136   -   IGNGIFFFFVRRSVLEKRT
   5 sc=     136   -   LKTPWTLITYQKSDLTKDT
   6 sc=     133   -   TA..VKNKRTI.SIE.NSP
   7 sc=     133   -   AAVVSTHVTERPHVVWIGE
   8 sc=     133   -   SETWPIPPPKVQLPSGTTS
   9 sc=     133   -   RNVVSLSEVTNNVSSAIVR
  10 sc=     133   -   KTIKPDNDDHAQAQELLWY
  11 sc=     131   -   II..IMLQQLTG.GSGGGL
  12 sc=     130   -   KV..LDYTTDA..EPQ.AA
  13 sc=      18   -   .................L.
  14 sc=      18   -   .................G.
  15 sc=      74   -   IV...VA..........H.
  16 sc=     108   -   KV..EVYGGLNVLIQDAGQ
  17 sc=      86   -   AAAVEEELVMMRQSIILII
  18 sc=      86   -   GGGGGGSSSGDVGVGNENG
  19 sc=      86   -   FNNKSSMGGSEGQGDLRLD
  20 sc=      86   -   TKKAPADGGNSGSERDDNS
  21 sc=      86   -   HVLVVAIVVIVVLSAIIIV
  22 sc=      86   -   NRRTNREAAQVAIKWPNPS
  23 sc=      86   -   LLLLLFFSSLLSLFFSLNL
  24 sc=      86   -   EDEETDEFFPSFEFDFDFT
  25 sc=      96   -   .VI....VI..Y.L..I..
  26 sc=      76   -   VPPCCCCCCCCCCCCQPQC
  27 sc=      18   -   ................A..
  28 sc=      78   -   DIIVSKTQQRDAIQKMFMS
  29 sc=      78   -   FSSSSVVAAVAAAVVSQTT
  30 sc=      74   -   I..ADESTTHDREAT.M.T
  31 sc=      50   -   GGGGGGGGGAGGGGGDSDG
  32 sc=      50   -   AEEEIYKEDRFDFDDDEDC
  33 sc=      50   -   PPPPPPPPPPPPPAPIHIE
  34 sc=      18   -   .............K.....
  35 sc=      65   -   DAPRADVKRRDPTDSDVDS
  36 sc=      34   -   PPPSPPPPPAPPPKA.E.P
  37 sc=       0   -   TTKSKETRKEESTDVDDEF
  38 sc=       0   -   AVAAIVVIIIIIIIIIIVF
  39 sc=       0   -   TTMRLMNTVTSVKSSKQRS
  40 sc=       0   -   WWWWWWWWWWWWWWWWWWW
  41 sc=       0   -   TKSTSFMMNLLRLFTESER
  42 sc=       0   -   VRRRRKKKKNKKHSKKKRT
  43 sc=       0   -   GGGIQDNKKNKNPPETGGQ
  44 sc=      28   -   .D...........N.S...
  45 sc=      18   -   .............G.....
  46 sc=     118   -   DQDSLDGGGEGGSEGDKSI
  47 sc=     118   -   SLKSNNDKKNEKDKNKTTD
  48 sc=     118   -   GFATNPVKKKPKPLDKKLS
  49 sc=     119   -   ATIP.VVVVEIVMSDKIVP
  50 sc=      34   -   ...........S....A..
  51 sc=      17   -   ................K..
  52 sc=       2   -   ................F..
  53 sc=       2   -   ................K..
  54 sc=       2   -   ................N..
  55 sc=       2   -   ................G..
  56 sc=       2   -   ................S..
  57 sc=       2   -   ................M..
  58 sc=     133   -   AAMAGKISSIEGPPLITAL
  59 sc=     133   -   LTEKEEPSNVDTTNPAFEN
  60 sc=     153   -   AEGLLSSQQQGQDQPQQFG
  61 sc=      91   -   PGSE.RD..GES.Q.FKK.
  62 sc=     133   -   ERGQQHYRRHERRRNRDRK
  63 sc=     133   -   LVRRPFFFFRKYVIAKKKV
  64 sc=     124   -   LHITLQQEEHITISQETMT
  65 sc=     124   -   VIRYSIIVVRSVYVVKYKN
  66 sc=     124   -   DDTGEDVIIVFLQVTEEPE
  67 sc=      92   -   .SE..Y.EE..E.W.TVF.
  68 sc=      57   -   ..S..D.FF..Q.N.F.L.
  69 sc=       7   -   ...............K.K.
  70 sc=      15   -   ...............E.S.
  71 sc=      22   -   ...............K.G.
  72 sc=      13   -   ...............D...
  73 sc=      28   -   ...............T.A.
  74 sc=      32   -   ...............Y.F.
  75 sc=      34   -   ...............K.E.
  76 sc=      54   -   .....E.DD......L.I.
  77 sc=     122   -   AQYL.E.DDLNPND.FLLG
  78 sc=     113   -   KAPM.G.GGAEGHD.KKAT
  79 sc=     128   -   SDDDNNGASNDGNDGNNNT
  80 sc=     107   -   SLSSTCGGGGKIKSGGGGS
  81 sc=     106   -   TSSHTSSSSDSSTSRTTDT
  82 sc=     106   -   TSTT..NVV.EI.T.....
  83 sc=      34   -   S..V...............
  84 sc=       0   -   IFLLLLLLLLMLLLLLLLL
  85 sc=       0   -   FVVQTTRRRLTRQTLKKKT
  86 sc=       0   -   FIIIFIIIIIIILIFIIIM
  87 sc=       0   -   PEDSMSLQQSYELYTKKKN
  88 sc=       0   -   SSISSEGPPERPNNDHHNP
  89 sc=       0   -   AAAATVVLLIVVVALLLLV
  90 sc=       0   -   KEEKKCVRRKERGNKKETS
  91 sc=      48   -   RRRPRGKVTWKAEIETRRF
  92 sc=      48   -   ASDSDDSQPEEGEDDDIDG
  93 sc=      48   -   DDDDDDDRRDDRDDNDHDN
  94 sc=      48   -   .......DD..D.......
  95 sc=       0   -   SESASDEEEMEDDAAQESE
  96 sc=       0   -   GGGGGAGAAGAAGGGDGGH
  97 sc=       0   -   NRVTIKFIINEPEIVITTS
  98 sc=       0   -   YYYYYYYYYYYYYYYYYYY
  99 sc=       0   -   KCHVVTQEEKSETKRKKNL
 100 sc=       0   -   LIICCCCCCCCCCCCVVVC
 101 sc=       0   -   KTNLEKVTVIIVLVVSDTT
 102 sc=       0   -   VVLAGAAAAAAAAVAIAVA
 103 sc=       0   -   KTKQIVETSRNEETKYYYT
 104 sc=       0   -   NNNNNNNNNNNNNATDDSC
 105 sc=       0   -   EPEAESESNVQGSEKTSTE
 106 sc=       0   -   LVALALALVVAVLDAKDNS
 107 sc=      18   -   GGGGGGGGGGGGGGGGGGR
 108 sc=       4   -   .............T.KKT.
 109 sc=      16   -   .............Q.....
 110 sc=      21   -   .............S.NNR.
 111 sc=      50   -   EEETIENEEKEDSEPVVIK
 112 sc=      50   -   DDAASAAIIDAAAALLLLL
 113 sc=      51   -   ESHQRTQNSTE.RTQEEDE
 114 sc=      35   -   AAAKKCTTVAAVHVTKEKK
 115 sc=      35   -   ITSQSTSSSDISANRITAG
 116 sc=      35   -   FLIVVAAATTVAYVTFFLI
 117 sc=      35   -   EHKEEEQKRFLDYKVDHDQ
 118 sc=      88   -   V....LL.....V..LLLV
 119 sc=      99   -   IVVVLLILLVLATILKSRE
 120 sc=      18   -   .....V.............
 121 sc=       9   -   .....E.............
 122 sc=     107   -   VRKIITVSTYKTVFNILII
 123 sc=     107   -   QVVVIMPVVPVLEQVQLLY

