Filename: ref2/test/1aboA_ref2.msf
Score details:
Alignment: ref2/test/1aboA_ref2.msf Score (DiffScore)= 1539
   0 sc=       0   -   .........R.....
   1 sc=       1   -   .........R.....
   2 sc=       0   -   .........S.....
   3 sc=       1   -   .........F.....
   4 sc=       1   -   .........Q.....
   5 sc=       3   -   .T.......E.....
   6 sc=      11   -   .A...G..EP.....
   7 sc=      32   -   .G..GSGGDE.E.G.
   8 sc=      55   -   NKMASPKTIEATKY.
   9 sc=      69   -   LIEETTEEITLKGQN
  10 sc=      63   -   FFAYYFLCVLFFVYF
  11 sc=      63   -   VRIVVKVIVVVVIRR
  12 sc=      13   -   .....C.........
  13 sc=      14   -   .....A.........
  14 sc=      14   -   .....V.........
  15 sc=      56   -   ...RQKL..I.QY..
  16 sc=      14   -   AAAAAAAAAAAAAA.
  17 sc=      14   -   LMKLLLLKLLLLLLV
  18 sc=      14   -   YYYFFFYYYYYFWYY
  19 sc=      14   -   DDDDDDDNDDDDDD.
  20 sc=      14   -   FYFFFYYFYYYFYYY
  21 sc=      14   -   VMKNDKQHEQENEKR
  22 sc=      14   -   AAAGPAEGATAPPKD
  23 sc=      14   -   SATNQQKTINIQQES
  24 sc=      14   -   GDADERSAHDTENRR
  25 sc=      14   -   DADEDEPEHPESDED
  26 sc=       0   -   NDDEGDRQEQDGDE.
  27 sc=       0   -   TEEDEEEDDEDEED.
  28 sc=       0   -   LVLLLLVLLLLLLI.
  29 sc=      14   -   .............D.
  30 sc=      14   -   .............L.
  31 sc=      14   -   .............H.
  32 sc=      14   -   .............L.
  33 sc=      14   -   .............G.
  34 sc=      14   -   .............D.
  35 sc=      14   -   .............I.
  36 sc=      14   -   .............L.
  37 sc=      14   -   SSSPGTTPSASAPTP
  38 sc=      14   -   IFFFFFMFFLFFMVV
  39 sc=      14   -   TKKKRIKCQRHKKNW
  40 sc=      14   -   KDRKRKKKKCKREKK
  41 sc=      14   -   GGGGGSGGGDGGGGG
  42 sc=      14   -   EDDDDADDDEEDDSP
  43 sc=      14   -   KAIIFIIVQEKVCLA
  44 sc=      14   -   LILLIILLMYFIMVK
  45 sc=      14   -   RIKRHQTTVYQTTAL
  46 sc=      14   -   VNVIVNLIVLILILL
  47 sc=       0   -   .............G.
  48 sc=       0   -   .............F.
  49 sc=      14   -   LVLRMVLVLLLIISW
  50 sc=      14   -   GQNDDENAEDNNHDK
  51 sc=      14   -   Y..............
  52 sc=      27   -   NAEKNKSVESSKRGG
  53 sc=      39   -   HIEPSQTTSSSDEQE
  54 sc=      55   -   NDCEDENK.EEDDEG
  55 sc=      59   -   GEDEPGKDGIGPEAA
  56 sc=       1   -   .............R.
  57 sc=       1   -   .............P.
  58 sc=       0   -   ............DE.
  59 sc=      22   -   ............EE.
  60 sc=      26   -   ............II.
  61 sc=      38   -   EGQQNGDPEHDNEG.
  62 sc=      38   -   WWNWWWWNWWWWWW.
  63 sc=      38   -   CMWWWWWWWWWWWL.
  64 sc=      38   -   EYYNKRKYKREEWN.
  65 sc=      38   -   AGKAGGVKAVAGAGV
  66 sc=      74   -   .TAE...ARQR..YV
  67 sc=      63   -   .V.....KS.S..NI
  68 sc=      68   -   QQEDADENLDLQREQ
  69 sc=      56   -   TRLSCYVKAKTLLTD
  70 sc=       0   -   KTNEHGNVTNTNNTN
  71 sc=       0   -   NGGGGGDGRGGNDGS
  72 sc=       0   -   GRKKQKRRKHERKED
  73 sc=       0   -   QTDRTKQEEETRERI
  74 sc=       0   -   GGGGGQGGGGGGGGK
  75 sc=      14   -   WMFMMLFIYYYIYDV
  76 sc=      14   -   .....W.........
  77 sc=       0   -   VLIIFFVIIAIFVFV
  78 sc=       0   -   PPPPPPPPPPPPPPP
  79 sc=       0   -   SAKVRSAASSSSRGR
  80 sc=       0   -   NNNPNNANNSNNNTR
  81 sc=       0   -   YYYYYYYYYYYYLYK
  82 sc=       0   -   IVIVVVVVVLVVLVA
  83 sc=       0   -   TEEETEKQAVACGEK
  84 sc=       0   -   PAMKPEKKREPPLYI
  85 sc=       0   -   VIKYVMLRVKVYYII
  86 sc=       0   -   N.P..V..DS..PGR
  87 sc=       0   -   .............RD
  88 sc=       0   -   .............K.
  89 sc=       0   -   .............K.
  90 sc=       0   -   .............I.
  91 sc=       0   -   .............S.
  92 sc=       0   -   .............P.

