Filename: ref2/test/1aboA_ref2.msf
Score details:
Alignment: ref2/test/1aboA_ref2.msf Score (DiffScore)= 844
   0 sc=       0   -   .........R.....
   1 sc=       1   -   .........R.....
   2 sc=       0   -   .........S.....
   3 sc=       0   -   .....G...F.....
   4 sc=       0   -   .....S...Q.....
   5 sc=       0   -   .....P...E.....
   6 sc=       0   -   .T...T...P.....
   7 sc=       0   -   .A..GFG.EE.E...
   8 sc=       0   -   .G.ASKKGDE.TKG.
   9 sc=       0   -   NKMETCETITAKGY.
  10 sc=      14   -   LIEYYALEILLFVQ.
  11 sc=      14   -   FFAVVVVCVVFVIYN
  12 sc=      14   -   VRIRQKLIVIVQYRF
  13 sc=      14   -   AAAAAAAAAAAAAAR
  14 sc=      14   -   LMKLLLLKLLLLLLV
  15 sc=      14   -   YYYFFFYYYYYFWYY
  16 sc=      14   -   DDDDDDDNDDDDDD.
  17 sc=      14   -   FYFFFYYFYYYFYYY
  18 sc=      14   -   VMKNDKQHEQENEKR
  19 sc=      14   -   AAAGPAEGATAPPKD
  20 sc=      14   -   SATNQQKTINIQQES
  21 sc=      14   -   GDADERSAHDTENRR
  22 sc=      14   -   DADEDEPEHPESDED
  23 sc=       0   -   NDDEGDRQEQDGDE.
  24 sc=       0   -   TEEDEEEDDEDEED.
  25 sc=       0   -   LVLLLLVLLLLLLI.
  26 sc=       0   -   SSSPGTTPSASAPDP
  27 sc=       0   -   IFFFFFMFFLFFMLV
  28 sc=       0   -   TKKKRIKCQRHKKHW
  29 sc=       0   -   KDRKRKKKKCKRELK
  30 sc=       0   -   GGGGGSGGGDGGGGG
  31 sc=       0   -   EDDDDADDDEEDDDP
  32 sc=       0   -   KAIIFIIVQEKVCIA
  33 sc=       0   -   LILLIILLMYFIMLK
  34 sc=       0   -   RIKRHQTTVYQTTTL
  35 sc=       0   -   VNVIVNLIVLILIVL
  36 sc=      14   -   LVLRMVLVLLLIIN.
  37 sc=      14   -   GQNDDENAEDNNHK.
  38 sc=      44   -   ..E....V....RG.
  39 sc=      13   -   .............S.
  40 sc=       3   -   .............L.
  41 sc=       0   -   .............V.
  42 sc=       0   -   .............A.
  43 sc=       0   -   .............L.
  44 sc=       0   -   .............G.
  45 sc=       0   -   .............F.
  46 sc=       0   -   .............S.
  47 sc=       0   -   .............D.
  48 sc=       0   -   .............G.
  49 sc=       0   -   .............Q.
  50 sc=       0   -   .............E.
  51 sc=      13   -   ............EA.
  52 sc=      27   -   Y...........DRW
  53 sc=      65   -   NAEKNKSTESSKEPK
  54 sc=      65   -   HICPSQTKSSSDDEG
  55 sc=      14   -   NDDEDEND.EEDEEE
  56 sc=      14   -   GEQEPGKPGIGPIIG
  57 sc=      14   -   EGNQNGDNEHDNEG.
  58 sc=      14   -   WWWWWWWWWWWWWW.
  59 sc=      14   -   CMYWWWWYWWWWWL.
  60 sc=      14   -   EYKNKRKKKREEWN.
  61 sc=      14   -   AGAAGGVAAVAGAGA
  62 sc=      14   -   QTEEADEKRQRQRYV
  63 sc=      54   -   .V......S.S..NV
  64 sc=      47   -   .Q.D.Y..LDL..EI
  65 sc=      69   -   TRLSCGVNAKTLLTQ
  66 sc=      39   -   KTNEHGNKTNTNNTD
  67 sc=      26   -   .......V......N
  68 sc=      14   -   NGGGGKDGRGGNDGS
  69 sc=      14   -   GRKKQKRRKHERKED
  70 sc=      14   -   QTDRTQQEEETRERI
  71 sc=      14   -   GGGGGLGGGGGGGGK
  72 sc=       0   -   WMFMMWFIYYYIYDV
  73 sc=       0   -   VLIIFFVIIAIFVFV
  74 sc=       0   -   PPPPPPPPPPPPPPP
  75 sc=       0   -   SAKVRSAASSSSRGR
  76 sc=       0   -   NNNPNNANNSNNNTR
  77 sc=       0   -   YYYYYYYYYYYYLYK
  78 sc=       0   -   IVIVVVVVVLVVLVA
  79 sc=       0   -   TEEETEKQAVACGEK
  80 sc=       0   -   PAMKPEKKREPPLYI
  81 sc=       0   -   VIKYVMLRVKVYYII
  82 sc=       0   -   N.P..V..DS..PGR
  83 sc=       0   -   .............RD
  84 sc=       0   -   .............K.
  85 sc=       0   -   .............K.
  86 sc=       0   -   .............I.
  87 sc=       0   -   .............S.
  88 sc=       0   -   .............P.

