Filename: ref1/test1/1csy_ref1.msf
PairWiseDynPrg:
         0   1.69643   1.52679   1.65179   1.65179
   1.69643         0   1.79464   1.86607   1.74107
   1.52679   1.79464         0   1.69643   1.75893
   1.65179   1.86607   1.69643         0         2
   1.65179   1.74107   1.75893         2         0

Score details:
Alignment: ref1/test1/1csy_ref1.msf Score (DiffScore)= 269
   0 sc=       0   -   S E . . H 
   1 sc=       0   -   H M . L H 
   2 sc=       0   -   E K . Q D 
   3 sc=       0   -   K P M D Ea
   4 sc=       0   -   M H R A Ka
   5 sc=       0   -   P P R E Ta
   6 sc=       0   -   W W W W Wa
   7 sc=       0   -   F F F Y N 
   8 sc=       0   -   H F H W V 
   9 sc=       0   -   G G P G G 
  10 sc=       0   -   K K N D S 
  11 sc=       0   -   I I I I S 
  12 sc=       0   -   S P T S N 
  13 sc=       0   -   R RaGaRaRa
  14 sc=       0   -   EaAaVaEaNa
  15 sc=       0   -   EaKaEaEaKa
  16 sc=       0   -   SaAaAaVaAa
  17 sc=       0   -   EaEaEaNaEa
  18 sc=       0   -   QaEaNaEaNa
  19 sc=       8   -   Ia.a.a.a.a
  20 sc=       8   -   VaMaLaKaLa
  21 sc=       8   -   LaLaLaLaLa
  22 sc=      12   -   IaSaLaRaR 
  23 sc=       8   -   G K TaD G 
  24 sc=       6   -   S Q R T K 
  25 sc=       2   -   K R G . . 
  26 sc=       0   -   T H V A R 
  27 sc=       0   -   N D D D D 
  28 sc=       0   -   G G G G G 
  29 sc=       0   -   KbA SbTbTb
  30 sc=       0   -   FbFbFbFbFb
  31 sc=       0   -   LbLbLbLbLb
  32 sc=       0   -   IbIbAbVbVb
  33 sc=       0   -   RbRbRbRbRb
  34 sc=       0   -   A EbPbD Eb
  35 sc=       0   -   R S S A S 
  36 sc=       6   -   . E K . . 
  37 sc=       6   -   D S S S S 
  38 sc=       4   -   N A N T K 
  39 sc=       0   -   . . . K . 
  40 sc=       4   -   . . . M . 
  41 sc=       0   -   N P P H Q 
  42 sc=       0   -   G G G G G 
  43 sc=       0   -   S D D D C 
  44 sc=       0   -   YbFbFbY Yb
  45 sc=       0   -   AbSbTbTbAb
  46 sc=       0   -   LbLbLbLbCb
  47 sc=       0   -   CbSbSbTbSb
  48 sc=       0   -   LbVbVbLbVb
  49 sc=       0   -   L KbRbRbVb
  50 sc=       0   -   H FbRbK V 
  51 sc=       0   -   E G N G D 
  52 sc=       0   -   G N G G G 
  53 sc=       0   -   K DbAbN E 
  54 sc=       0   -   V VbVbNbVb
  55 sc=       0   -   L QbTbKbKb
  56 sc=       0   -   H HbHbLbHb
  57 sc=       0   -   YbFbIbIbCb
  58 sc=       0   -   RbKbKbKbVb
  59 sc=       0   -   IbVbI I Ib
  60 sc=       0   -   D LbQbF N 
  61 sc=       0   -   K RbNbH K 
  62 sc=       7   -   D D T R T 
  63 sc=       7   -   K G G D A 
  64 sc=       7   -   T A D G T 
  65 sc=       7   -   G G Y K G 
  66 sc=      12   -   K K YbY Y 
  67 sc=      14   -   L YbDbG G 
  68 sc=      11   -   S FbL F F 
  69 sc=      11   -   I L Y S Ab
  70 sc=       3   -   P . . . .b
  71 sc=       5   -   E W G D Eb
  72 sc=       4   -   G V G P P 
  73 sc=       4   -   K V E L Y 
  74 sc=       8   -   K KbK T Nb
  75 sc=       8   -   . .b. . Lb
  76 sc=       0   -   F FbF F Y 
  77 sc=       0   -   D N A N S 
  78 sc=       0   -   T S T S S 
  79 sc=       0   -   LaLaLaVaLa
  80 sc=       0   -   WaNaAaVaKa
  81 sc=       0   -   QaEaEaEaEa
  82 sc=       0   -   LaLaLaLaLa
  83 sc=       0   -   VaVaVaIaVa
  84 sc=       0   -   EaDaQaNaLa
  85 sc=       0   -   HaYaYaHaHa
  86 sc=       0   -   YaHaYaYaYa
  87 sc=       0   -   S RaMaRaQa
  88 sc=       0   -   Y SaEaN Ha
  89 sc=       0   -   K T H E T 
  90 sc=       0   -   A S H S S 
  91 sc=       3   -   . V G L L 
  92 sc=       3   -   . S Q A V 
  93 sc=       4   -   . R L Q Qa
  94 sc=       8   -   . N KbY .a
  95 sc=       8   -   . Q EbN Ha
  96 sc=       8   -   . Q K P Na
  97 sc=       9   -   D . N K Da
  98 sc=       4   -   G I G L S 
  99 sc=       4   -   L F D D L 
 100 sc=       4   -   L L V V N 
 101 sc=       4   -   R R I . V 
 102 sc=       0   -   V D E K T 
 103 sc=       0   -   L I L L L 
 104 sc=       4   -   T E K L A 
 105 sc=       7   -   VbQ YbY Yb
 106 sc=       7   -   PbV PbP Pb
 107 sc=       4   -   C P L V V 
 108 sc=       4   -   Q Q N S Y 
 109 sc=       4   -   K Q . . A 

